Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf975 family protein | DWZ06_11900 | Not Available | Negative | 2891607 - 2892233 | 23264.0 |
| branched-chain amino acid aminotransferase | DWZ06_11905 | Not Available | Negative | 2892251 - 2893270 | 37876.2 |
| exodeoxyribonuclease vii small subunit | DWZ06_11910 | Not Available | Negative | 2893451 - 2893654 | 7823.46 |
| exodeoxyribonuclease vii large subunit | DWZ06_11915 | Not Available | Negative | 2893663 - 2894970 | 49535.8 |
| serine protease | DWZ06_11920 | Not Available | Negative | 2894970 - 2896343 | 49946.9 |
| mate family efflux transporter | DWZ06_11925 | Not Available | Positive | 2896465 - 2897835 | 49490.1 |
| cytidylate kinase-like family protein | DWZ06_11930 | Not Available | Positive | 2897889 - 2898518 | 23564.2 |
| sodium:glutamate symporter | DWZ06_11935 | Not Available | Negative | 2898950 - 2900329 | 49927.3 |
| hypothetical protein | DWZ06_11940 | Not Available | Negative | 2900544 - 2901158 | 23056.4 |
| hypothetical protein | DWZ06_11945 | Not Available | Positive | 2901506 - 2902261 | 27755.0 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

