Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ06_11850 | Not Available | Positive | 2880647 - 2881519 | 33451.4 |
| tolc family protein | DWZ06_11855 | Not Available | Positive | 2881735 - 2883198 | 53453.8 |
| biotin/lipoyl-binding protein | DWZ06_11860 | Not Available | Positive | 2883225 - 2884211 | 35975.9 |
| abc transporter permease | DWZ06_11865 | Not Available | Positive | 2884218 - 2885393 | 44285.0 |
| abc transporter permease | DWZ06_11870 | Not Available | Positive | 2885408 - 2886658 | 47484.7 |
| copper resistance protein nlpe | DWZ06_11875 | Not Available | Positive | 2886694 - 2887122 | 15888.7 |
| blai/meci/copy family transcriptional regulator | DWZ06_11880 | Not Available | Positive | 2887309 - 2887674 | 14186.1 |
| tonb family protein | DWZ06_11885 | Not Available | Positive | 2887697 - 2889547 | 69528.6 |
| mrp family atp-binding protein | DWZ06_11890 | Not Available | Negative | 2889615 - 2890715 | 39541.0 |
| trna (guanosine(46)-n7)-methyltransferase trmb | DWZ06_11895 | Not Available | Negative | 2890726 - 2891484 | 29803.7 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

