Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ06_11800 | Not Available | Positive | 2866697 - 2867845 | 42382.6 |
| port family protein | DWZ06_11805 | Not Available | Positive | 2867854 - 2868630 | 29104.0 |
| duf4925 domain-containing protein | DWZ06_11810 | Not Available | Negative | 2869487 - 2870683 | 43349.2 |
| phosphoenolpyruvate synthase | DWZ06_11815 | Not Available | Negative | 2870793 - 2873750 | 112923.0 |
| nadp-specific glutamate dehydrogenase | DWZ06_11820 | Not Available | Positive | 2873985 - 2875322 | 48494.3 |
| hypothetical protein | DWZ06_11825 | Not Available | Positive | 2875484 - 2875876 | 15101.9 |
| duf3440 domain-containing protein | DWZ06_11830 | Not Available | Positive | 2875869 - 2877170 | 52313.9 |
| chromosome partitioning protein parb | DWZ06_11835 | Not Available | Positive | 2877167 - 2877679 | 19744.9 |
| hypothetical protein | DWZ06_11840 | Not Available | Positive | 2877707 - 2879530 | 66858.8 |
| malate dehydrogenase | DWZ06_11845 | Not Available | Negative | 2879549 - 2880490 | 32849.0 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

