Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ06_11750 | Not Available | Negative | 2847680 - 2849995 | 89064.5 |
| hypothetical protein | DWZ06_11755 | Not Available | Negative | 2849976 - 2853791 | 144994.0 |
| serine/threonine protein phosphatase | DWZ06_11760 | Not Available | Negative | 2853798 - 2854856 | 40403.4 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ06_11765 | Not Available | Negative | 2854960 - 2856588 | 62504.4 |
| susc/raga family tonb-linked outer membrane protein | DWZ06_11770 | Not Available | Negative | 2856601 - 2859903 | 121135.0 |
| fecr family protein | DWZ06_11775 | Not Available | Negative | 2860141 - 2861136 | 38504.3 |
| rna polymerase sigma-70 factor | DWZ06_11780 | Not Available | Negative | 2861195 - 2861803 | 23944.0 |
| nadp-dependent malic enzyme | DWZ06_11785 | Not Available | Positive | 2862455 - 2864740 | 84255.2 |
| hypothetical protein | DWZ06_11790 | Not Available | Positive | 2864869 - 2865051 | 6713.74 |
| nadp-specific glutamate dehydrogenase | DWZ06_11795 | Not Available | Positive | 2865207 - 2866541 | 48972.7 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

