Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| deoxyribonuclease iv | DWZ06_11645 | Not Available | Positive | 2820682 - 2821518 | 31427.5 |
| trpb-like pyridoxal phosphate-dependent enzyme | DWZ06_11650 | Not Available | Negative | 2821834 - 2823198 | 50244.2 |
| potassium transporter | DWZ06_11655 | Not Available | Positive | 2823375 - 2825222 | 68701.9 |
| trka family potassium uptake protein | DWZ06_11660 | Not Available | Positive | 2825225 - 2825911 | 25637.0 |
| duf4738 domain-containing protein | DWZ06_11665 | Not Available | Positive | 2826126 - 2826695 | 21153.6 |
| hypothetical protein | DWZ06_11670 | Not Available | Positive | 2826788 - 2827228 | 16654.3 |
| hypothetical protein | DWZ06_11680 | Not Available | Positive | 2828308 - 2828604 | 11670.1 |
| acyltransferase | DWZ06_11685 | Not Available | Positive | 2828638 - 2829375 | 27139.0 |
| mboat family protein | DWZ06_11690 | Not Available | Negative | 2829432 - 2830913 | 57333.8 |
| hypothetical protein | DWZ06_11695 | Not Available | Negative | 2830891 - 2831853 | 35841.4 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

