Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pyridine nucleotide-disulfide oxidoreductase | DWZ06_11595 | Not Available | Positive | 2805799 - 2808300 | 90798.8 |
| marr family transcriptional regulator | DWZ06_11600 | Not Available | Positive | 2808334 - 2808663 | 12226.9 |
| clc family h(+)/cl(-) exchange transporter | DWZ06_11605 | Not Available | Positive | 2808696 - 2810294 | 59693.1 |
| diacylglucosamine hydrolase | DWZ06_11610 | Not Available | Positive | 2810304 - 2810894 | 22791.2 |
| arac family transcriptional regulator | DWZ06_11615 | Not Available | Positive | 2810891 - 2812708 | 70592.4 |
| susc/raga family tonb-linked outer membrane protein | DWZ06_11620 | Not Available | Positive | 2812901 - 2816152 | 121680.0 |
| starch-binding protein | DWZ06_11625 | Not Available | Positive | 2816164 - 2817585 | 53335.2 |
| ahpc/tsa family protein | DWZ06_11630 | Not Available | Positive | 2817604 - 2818785 | 43766.7 |
| Trna-glu | Not Available | Not Available | Positive | 2819133 - 2819207 | Not Available |
| hypothetical protein | DWZ06_11640 | Not Available | Positive | 2819350 - 2820639 | 48095.4 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

