Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dead/deah box helicase | DWZ06_11540 | Not Available | Positive | 2792137 - 2794416 | 86454.2 |
| duf4250 domain-containing protein | DWZ06_11545 | Not Available | Positive | 2794531 - 2794707 | 6921.42 |
| arac family transcriptional regulator | DWZ06_11550 | Not Available | Negative | 2794770 - 2795654 | 34283.2 |
| o-succinylbenzoic acid--coa ligase | DWZ06_11555 | Not Available | Negative | 2795910 - 2796995 | 40554.3 |
| o-succinylbenzoate synthase | DWZ06_11560 | Not Available | Negative | 2796992 - 2798047 | 39848.0 |
| 1,4-dihydroxy-2-naphthoyl-coa synthase | DWZ06_11565 | Not Available | Negative | 2798125 - 2798946 | 30417.5 |
| 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase | DWZ06_11570 | Not Available | Negative | 2798946 - 2800619 | 62975.0 |
| isochorismate synthase | DWZ06_11575 | Not Available | Negative | 2800646 - 2801788 | 43212.4 |
| hotdog fold thioesterase | DWZ06_11580 | Not Available | Negative | 2801785 - 2802192 | 14488.4 |
| mate family efflux transporter | DWZ06_11590 | Not Available | Negative | 2804207 - 2805562 | 49655.3 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

