Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase | DWZ06_11490 | Not Available | Positive | 2783506 - 2784246 | 28841.5 |
| hypothetical protein | DWZ06_11495 | Not Available | Positive | 2784254 - 2785060 | 30707.7 |
| undecaprenyl-phosphate glucose phosphotransferase | DWZ06_11500 | Not Available | Positive | 2785124 - 2786545 | 54992.7 |
| hypothetical protein | DWZ06_11505 | Not Available | Positive | 2786577 - 2786792 | 7570.59 |
| n-acetylmuramoyl-l-alanine amidase | DWZ06_11510 | Not Available | Negative | 2786973 - 2787491 | 19703.7 |
| dna-binding protein | DWZ06_11515 | Not Available | Negative | 2787802 - 2788341 | 19200.7 |
| duf4248 domain-containing protein | DWZ06_11520 | Not Available | Negative | 2788670 - 2788894 | 8400.27 |
| duf3987 domain-containing protein | DWZ06_11525 | Not Available | Negative | 2788912 - 2790855 | 71616.3 |
| virulence protein e | DWZ06_11530 | Not Available | Negative | 2790859 - 2791428 | 21603.9 |
| hypothetical protein | DWZ06_11535 | Not Available | Positive | 2791614 - 2792081 | 16988.2 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

