Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nucleotide sugar dehydrogenase | DWZ06_11440 | Not Available | Positive | 2772050 - 2773306 | 47504.7 |
| lipopolysaccharide biosynthesis protein | DWZ06_11445 | Not Available | Positive | 2773352 - 2774887 | 57850.8 |
| hypothetical protein | DWZ06_11450 | Not Available | Positive | 2774884 - 2776101 | 47593.4 |
| hypothetical protein | DWZ06_11455 | Not Available | Positive | 2776119 - 2777099 | 38155.4 |
| glycosyl transferase | DWZ06_11460 | Not Available | Positive | 2777124 - 2777891 | 30116.3 |
| glycosyltransferase | DWZ06_11465 | Not Available | Positive | 2778120 - 2779163 | 41335.1 |
| polysaccharide pyruvyl transferase family protein | DWZ06_11470 | Not Available | Positive | 2779160 - 2780335 | 46143.9 |
| 4fe-4s dicluster domain-containing protein | DWZ06_11475 | Not Available | Positive | 2780332 - 2781519 | 46163.3 |
| glycoside hydrolase family 16 protein | DWZ06_11480 | Not Available | Positive | 2781516 - 2782280 | 29563.6 |
| glycosyltransferase | DWZ06_11485 | Not Available | Positive | 2782280 - 2783458 | 45597.6 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

