Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna polymerase iii subunit alpha | DWZ06_11315 | Not Available | Positive | 2741632 - 2745429 | 143977.0 |
| thioredoxin | DWZ06_11320 | Not Available | Positive | 2745471 - 2745785 | 11454.8 |
| hypothetical protein | DWZ06_11325 | Not Available | Positive | 2745821 - 2746156 | 12878.8 |
| plasmid pria4b orf-3 family protein | DWZ06_11330 | Not Available | Positive | 2746336 - 2747895 | 61127.4 |
| hypothetical protein | DWZ06_11335 | Not Available | Negative | 2748010 - 2748231 | 8312.45 |
| trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex atpase subunit type 1 tsae | DWZ06_11340 | Not Available | Negative | 2748293 - 2748721 | 16199.1 |
| metal abc transporter permease | DWZ06_11345 | Not Available | Negative | 2748705 - 2749556 | 31196.3 |
| phospholipase | DWZ06_11350 | Not Available | Negative | 2749608 - 2750027 | 15918.1 |
| 3-phosphoshikimate 1-carboxyvinyltransferase | DWZ06_11355 | Not Available | Negative | 2750032 - 2751258 | 45902.5 |
| class i fructose-bisphosphate aldolase | DWZ06_11360 | Not Available | Negative | 2751420 - 2752472 | 38036.4 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

