Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| efflux rnd transporter periplasmic adaptor subunit | DWZ06_11215 | Not Available | Negative | 2720259 - 2721335 | 39686.0 |
| m20/m25/m40 family metallo-hydrolase | DWZ06_11220 | Not Available | Negative | 2721422 - 2722441 | 38280.7 |
| ribosome small subunit-dependent gtpase a | DWZ06_11225 | Not Available | Negative | 2722455 - 2723387 | 35068.7 |
| ribosome-recycling factor | DWZ06_11230 | Not Available | Negative | 2723508 - 2724068 | 20738.2 |
| aaa family atpase | DWZ06_11235 | Not Available | Positive | 2724307 - 2725887 | 61132.9 |
| histidine phosphatase family protein | DWZ06_11240 | Not Available | Positive | 2726290 - 2726808 | 19475.5 |
| duf4450 domain-containing protein | DWZ06_11245 | Not Available | Negative | 2726831 - 2730088 | 121451.0 |
| hypothetical protein | DWZ06_11250 | Not Available | Negative | 2730113 - 2732221 | 79995.1 |
| glycoside hydrolase family 88 protein | DWZ06_11255 | Not Available | Negative | 2732276 - 2733514 | 47145.2 |
| ump kinase | DWZ06_11260 | Not Available | Negative | 2733772 - 2734482 | 25575.2 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

