Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | DWZ06_11165 | Not Available | Positive | 2699918 - 2702917 | 111300.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ06_11170 | Not Available | Positive | 2702941 - 2704527 | 58761.5 |
| gtpase hflx | DWZ06_11175 | Not Available | Positive | 2704619 - 2705872 | 47657.5 |
| duf4954 family protein | DWZ06_11180 | Not Available | Positive | 2705886 - 2707871 | 74478.4 |
| coce/nond family hydrolase | DWZ06_11185 | Not Available | Negative | 2708019 - 2709926 | 74067.1 |
| fumarate hydratase | DWZ06_11190 | Not Available | Positive | 2710065 - 2711708 | 60487.7 |
| alpha-n-acetylglucosaminidase | DWZ06_11195 | Not Available | Positive | 2711811 - 2713967 | 82617.3 |
| amino acid permease | DWZ06_11200 | Not Available | Negative | 2714141 - 2715799 | 59786.5 |
| tolc family protein | DWZ06_11205 | Not Available | Negative | 2715888 - 2717207 | 50661.8 |
| acrb/acrd/acrf family protein | DWZ06_11210 | Not Available | Negative | 2717204 - 2720239 | 112053.0 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

