Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 16s rrna (cytidine(1402)-2'-o)-methyltransferase | DWZ06_11115 | Not Available | Positive | 2684489 - 2685163 | 24887.2 |
| hypothetical protein | DWZ06_11120 | Not Available | Positive | 2685192 - 2686040 | 31533.4 |
| noncanonical pyrimidine nucleotidase, yjjg family | DWZ06_11125 | Not Available | Positive | 2686116 - 2686805 | 26954.8 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ06_11130 | Not Available | Negative | 2686956 - 2688431 | 54874.2 |
| tonb-dependent receptor | DWZ06_11135 | Not Available | Negative | 2688460 - 2691468 | 111374.0 |
| site-specific integrase | DWZ06_11140 | Not Available | Positive | 2691836 - 2692996 | 44986.7 |
| tonb-dependent receptor | DWZ06_11145 | Not Available | Positive | 2693587 - 2696547 | 109803.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ06_11150 | Not Available | Positive | 2696572 - 2698113 | 57184.2 |
| hypothetical protein | DWZ06_11155 | Not Available | Positive | 2698138 - 2698926 | 28499.5 |
| hypothetical protein | DWZ06_11160 | Not Available | Negative | 2699237 - 2699470 | 9191.23 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

