Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase | DWZ06_11065 | Not Available | Negative | 2675539 - 2676624 | 41256.5 |
| glycosyltransferase | DWZ06_11070 | Not Available | Negative | 2676628 - 2677614 | 38787.9 |
| hypothetical protein | DWZ06_11075 | Not Available | Negative | 2677611 - 2678804 | 44642.1 |
| glycosyl transferase | DWZ06_11080 | Not Available | Negative | 2678783 - 2679559 | 29735.9 |
| glycosyltransferase | DWZ06_11085 | Not Available | Negative | 2679574 - 2680530 | 36934.5 |
| polysaccharide pyruvyl transferase family protein | DWZ06_11090 | Not Available | Negative | 2680548 - 2681657 | 43113.8 |
| hypothetical protein | DWZ06_11095 | Not Available | Negative | 2681833 - 2682063 | 9054.23 |
| Trna-lys | Not Available | Not Available | Positive | 2682329 - 2682404 | Not Available |
| ai-2e family transporter | DWZ06_11105 | Not Available | Negative | 2682538 - 2683674 | 42777.2 |
| thymidine kinase | DWZ06_11110 | Not Available | Negative | 2683685 - 2684284 | 22372.9 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

