Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phenylacetate--coa ligase | DWZ06_11010 | Not Available | Negative | 2662515 - 2663816 | 48582.5 |
| pyridoxal phosphate-dependent aminotransferase | DWZ06_11015 | Not Available | Negative | 2663911 - 2665215 | 48672.3 |
| indolepyruvate oxidoreductase subunit beta | DWZ06_11020 | Not Available | Negative | 2665220 - 2665801 | 21245.8 |
| indolepyruvate ferredoxin oxidoreductase | DWZ06_11025 | Not Available | Negative | 2665798 - 2667414 | 58858.6 |
| amidohydrolase | DWZ06_11030 | Not Available | Negative | 2667438 - 2668199 | 28467.8 |
| aaa family atpase | DWZ06_11040 | Not Available | Negative | 2670972 - 2672540 | 60498.1 |
| hypothetical protein | DWZ06_11045 | Not Available | Negative | 2672617 - 2673456 | 31876.0 |
| glycosyltransferase family 1 protein | DWZ06_11050 | Not Available | Negative | 2673463 - 2674593 | 43816.9 |
| putative toxin-antitoxin system toxin component, pin family | DWZ06_11055 | Not Available | Negative | 2674782 - 2675201 | 15881.1 |
| dephospho-coa kinase | DWZ06_11060 | Not Available | Negative | 2675198 - 2675419 | 8641.25 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

