Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 25 protein | DWZ06_10955 | Not Available | Negative | 2646730 - 2647596 | 33936.9 |
| diphosphate--fructose-6-phosphate 1-phosphotransferase | DWZ06_10960 | Not Available | Negative | 2647722 - 2649365 | 59907.0 |
| hypothetical protein | DWZ06_10965 | Not Available | Positive | 2649516 - 2649764 | 9206.38 |
| acyltransferase | DWZ06_10970 | Not Available | Positive | 2649775 - 2650332 | 21350.4 |
| alpha-1,3-galactosidase b | DWZ06_10975 | Not Available | Negative | 2650415 - 2652232 | 69002.8 |
| xanthan lyase | DWZ06_10980 | Not Available | Positive | 2652315 - 2655185 | 106864.0 |
| hypothetical protein | DWZ06_10985 | Not Available | Positive | 2655276 - 2655593 | 12230.6 |
| ygiq family radical sam protein | DWZ06_10990 | Not Available | Positive | 2655644 - 2657530 | 72032.8 |
| hypothetical protein | DWZ06_11000 | Not Available | Negative | 2660065 - 2661849 | 69368.1 |
| amino acid-binding protein | DWZ06_11005 | Not Available | Negative | 2662085 - 2662501 | 15370.7 |
Pathways
343 pathways
Health Effects
No health effects information available for this bacterium.

