Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutamine abc transporter substrate-binding protein | DWZ06_10900 | Not Available | Positive | 2635131 - 2635949 | 30961.2 |
| gfo/idh/moca family oxidoreductase | DWZ06_10905 | Not Available | Positive | 2636038 - 2637027 | 36847.1 |
| duf4421 domain-containing protein | DWZ06_10910 | Not Available | Positive | 2637037 - 2638164 | 43092.1 |
| hypothetical protein | DWZ06_10915 | Not Available | Negative | 2638237 - 2639811 | 58686.1 |
| hypothetical protein | DWZ06_10920 | Not Available | Negative | 2639855 - 2641255 | 52403.5 |
| dna-binding protein | DWZ06_10925 | Not Available | Negative | 2641630 - 2642253 | 23853.8 |
| helicase | DWZ06_10935 | Not Available | Positive | 2642658 - 2644748 | 81456.1 |
| thioredoxin | DWZ06_10940 | Not Available | Positive | 2644979 - 2645239 | 10400.5 |
| 50s ribosomal protein l11 methyltransferase | DWZ06_10945 | Not Available | Positive | 2645250 - 2646095 | 31686.8 |
| yccf domain-containing protein | DWZ06_10950 | Not Available | Negative | 2646316 - 2646684 | 13206.2 |
Pathways
343 pathways
Health Effects
No health effects information available for this bacterium.

