Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribose 5-phosphate isomerase b | DWZ06_10850 | Not Available | Positive | 2627770 - 2628204 | 15944.1 |
| duf4468 domain-containing protein | DWZ06_10855 | Not Available | Positive | 2628311 - 2629408 | 40450.4 |
| tetratricopeptide repeat protein | DWZ06_10860 | Not Available | Positive | 2629773 - 2630069 | 11531.6 |
| 4fe-4s dicluster domain-containing protein | DWZ06_10865 | Not Available | Positive | 2630080 - 2630310 | 8117.04 |
| 3-methyl-2-oxobutanoate dehydrogenase subunit vorb | DWZ06_10870 | Not Available | Positive | 2630322 - 2631404 | 39202.6 |
| hypothetical protein | DWZ06_10875 | Not Available | Positive | 2631411 - 2631578 | 6434.4 |
| 2-oxoglutarate oxidoreductase | DWZ06_10880 | Not Available | Positive | 2631597 - 2632361 | 27912.9 |
| 2-oxoglutarate ferredoxin oxidoreductase subunit gamma | DWZ06_10885 | Not Available | Positive | 2632375 - 2632917 | 19888.6 |
| hypothetical protein | DWZ06_10890 | Not Available | Negative | 2632911 - 2633099 | 7558.39 |
| hypothetical protein | DWZ06_10895 | Not Available | Positive | 2633011 - 2635122 | 80786.2 |
Pathways
343 pathways
Health Effects
No health effects information available for this bacterium.

