Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| galactose mutarotase | DWZ06_10800 | Not Available | Positive | 2614050 - 2615144 | 39959.6 |
| mfs transporter | DWZ06_10805 | Not Available | Positive | 2615191 - 2616531 | 47498.5 |
| galactokinase | DWZ06_10810 | Not Available | Positive | 2616572 - 2617726 | 42994.0 |
| galactose mutarotase | DWZ06_10815 | Not Available | Positive | 2617923 - 2619077 | 41981.6 |
| sss family transporter | DWZ06_10820 | Not Available | Positive | 2619104 - 2620846 | 64455.8 |
| nudix hydrolase | DWZ06_10825 | Not Available | Positive | 2620922 - 2621599 | 26233.5 |
| l-ribulose-5-phosphate 4-epimerase | DWZ06_10830 | Not Available | Positive | 2621670 - 2622356 | 24994.8 |
| l-arabinose isomerase | DWZ06_10835 | Not Available | Positive | 2622396 - 2623925 | 57229.3 |
| atpase | DWZ06_10840 | Not Available | Positive | 2624028 - 2625626 | 57760.0 |
| transketolase | DWZ06_10845 | Not Available | Positive | 2625761 - 2627773 | 72423.4 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

