Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arac family transcriptional regulator | DWZ06_10745 | Not Available | Positive | 2601132 - 2601992 | 33567.5 |
| aldo/keto reductase | DWZ06_10750 | Not Available | Positive | 2602110 - 2603042 | 34845.4 |
| amidohydrolase | DWZ06_10755 | Not Available | Positive | 2603060 - 2603983 | 35621.2 |
| l-fucose:h+ symporter permease | DWZ06_10760 | Not Available | Positive | 2604010 - 2605269 | 47261.1 |
| sorbitol dehydrogenase | DWZ06_10765 | Not Available | Positive | 2605292 - 2606311 | 36707.0 |
| naat family transporter | DWZ06_10770 | Not Available | Negative | 2606384 - 2607028 | 23867.2 |
| abc-f family atpase | DWZ06_10780 | Not Available | Negative | 2608962 - 2610581 | 61289.0 |
| nucleotide exchange factor grpe | DWZ06_10785 | Not Available | Positive | 2610759 - 2611379 | 23521.8 |
| molecular chaperone dnaj | DWZ06_10790 | Not Available | Positive | 2611399 - 2612574 | 42231.3 |
| bifunctional folylpolyglutamate synthase/dihydrofolate synthase | DWZ06_10795 | Not Available | Positive | 2612669 - 2613955 | 48044.6 |
Pathways
343 pathways
Health Effects
No health effects information available for this bacterium.

