Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidylprolyl isomerase | DWZ06_10695 | Not Available | Negative | 2587109 - 2587750 | 23319.8 |
| glycine--trna ligase | DWZ06_10700 | Not Available | Negative | 2587761 - 2589302 | 59405.9 |
| dna gyrase/topoisomerase iv subunit a | DWZ06_10705 | Not Available | Positive | 2589454 - 2592147 | 102634.0 |
| duf3316 domain-containing protein | DWZ06_10710 | Not Available | Positive | 2592151 - 2592996 | 31970.1 |
| peptidase s41 | DWZ06_10715 | Not Available | Positive | 2593005 - 2594033 | 39153.0 |
| Trna-leu | Not Available | Not Available | Positive | 2594102 - 2594186 | Not Available |
| duf5110 domain-containing protein | DWZ06_10725 | Not Available | Negative | 2594284 - 2596737 | 93567.2 |
| glycoside hydrolase family 97 protein | DWZ06_10730 | Not Available | Negative | 2596912 - 2598795 | 71882.3 |
| l-rhamnose mutarotase | DWZ06_10735 | Not Available | Negative | 2598867 - 2599250 | 15479.7 |
| alpha-l-fucosidase | DWZ06_10740 | Not Available | Negative | 2599247 - 2600890 | 62595.7 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

