Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| efflux rnd transporter periplasmic adaptor subunit | DWZ06_10645 | Not Available | Positive | 2574926 - 2576020 | 40051.5 |
| tolc family protein | DWZ06_10650 | Not Available | Positive | 2576033 - 2577349 | 49375.2 |
| hypothetical protein | DWZ06_10655 | Not Available | Negative | 2577507 - 2578460 | 38492.4 |
| gntr family transcriptional regulator | DWZ06_10660 | Not Available | Negative | 2578584 - 2579417 | 31856.5 |
| iron-containing alcohol dehydrogenase | DWZ06_10665 | Not Available | Positive | 2579494 - 2580888 | 51619.1 |
| hypothetical protein | DWZ06_10670 | Not Available | Positive | 2580971 - 2581924 | 35136.6 |
| abc transporter atp-binding protein | DWZ06_10675 | Not Available | Negative | 2581936 - 2582595 | 23931.2 |
| trna threonylcarbamoyladenosine dehydratase | DWZ06_10680 | Not Available | Negative | 2582598 - 2583320 | 27062.2 |
| cation:proton antiporter | DWZ06_10685 | Not Available | Negative | 2583307 - 2585454 | 80167.6 |
| aspartate-semialdehyde dehydrogenase | DWZ06_10690 | Not Available | Positive | 2585620 - 2586630 | 37267.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

