Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ06_10595 | Not Available | Positive | 2562440 - 2563243 | 30936.2 |
| glycoside hydrolase family 28 protein | DWZ06_10600 | Not Available | Positive | 2563259 - 2564683 | 52161.9 |
| glycosyl hydrolase family 2 | DWZ06_10605 | Not Available | Positive | 2564700 - 2567462 | 104091.0 |
| hypothetical protein | DWZ06_10610 | Not Available | Negative | 2567816 - 2567938 | 4310.04 |
| isoaspartyl peptidase/l-asparaginase | DWZ06_10615 | Not Available | Negative | 2568414 - 2569400 | 34958.3 |
| l-rhamnose mutarotase | DWZ06_10620 | Not Available | Negative | 2570108 - 2570497 | 15271.5 |
| rok family protein | DWZ06_10625 | Not Available | Negative | 2570497 - 2571468 | 34315.4 |
| abc transporter atp-binding protein | DWZ06_10630 | Not Available | Positive | 2571621 - 2572340 | 26742.3 |
| abc transporter permease | DWZ06_10635 | Not Available | Positive | 2572350 - 2573606 | 46624.1 |
| abc transporter permease | DWZ06_10640 | Not Available | Positive | 2573611 - 2574852 | 45551.9 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

