Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ06_10545 | Not Available | Positive | 2542749 - 2544710 | 72932.9 |
| silent information regulator protein sir2 | DWZ06_10550 | Not Available | Positive | 2544802 - 2546652 | 69523.9 |
| glycoside hydrolase | DWZ06_10555 | Not Available | Positive | 2546766 - 2550053 | 122933.0 |
| glycoside hydrolase family 88 protein | DWZ06_10560 | Not Available | Positive | 2550194 - 2551327 | 43911.2 |
| beta-galactosidase | DWZ06_10565 | Not Available | Negative | 2551446 - 2553560 | 81034.4 |
| glycoside hydrolase | DWZ06_10570 | Not Available | Negative | 2553539 - 2555893 | 89237.7 |
| beta-glucuronidase | DWZ06_10575 | Not Available | Positive | 2556105 - 2558972 | 110089.0 |
| rhamnogalacturonan acetylesterase | DWZ06_10580 | Not Available | Positive | 2558991 - 2560265 | 47762.3 |
| glycoside hydrolase family 28 protein | DWZ06_10585 | Not Available | Positive | 2560283 - 2561767 | 54948.4 |
| duf4450 domain-containing protein | DWZ06_10590 | Not Available | Positive | 2561745 - 2562443 | 25996.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

