Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gntr family transcriptional regulator | DWZ06_10485 | Not Available | Negative | 2526357 - 2526722 | 14356.3 |
| hypothetical protein | DWZ06_10490 | Not Available | Negative | 2526719 - 2527609 | 33985.2 |
| abc transporter atp-binding protein | DWZ06_10495 | Not Available | Negative | 2527624 - 2528466 | 31481.2 |
| hypothetical protein | DWZ06_10510 | Not Available | Negative | 2530455 - 2530859 | 15303.8 |
| hypothetical protein | DWZ06_10515 | Not Available | Negative | 2530975 - 2531167 | 7327.87 |
| tonb-dependent receptor | DWZ06_10520 | Not Available | Positive | 2531168 - 2534392 | 119563.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ06_10525 | Not Available | Positive | 2534410 - 2536722 | 88109.9 |
| alpha-l-rhamnosidase | DWZ06_10530 | Not Available | Positive | 2537182 - 2538963 | 66517.1 |
| acetylxylan esterase | DWZ06_10535 | Not Available | Positive | 2539008 - 2540291 | 48875.1 |
| glycoside hydrolase family 2 protein | DWZ06_10540 | Not Available | Positive | 2540362 - 2542695 | 88162.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

