Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 30s ribosomal protein s9 | DWZ06_10435 | Not Available | Negative | 2515864 - 2516250 | 14527.7 |
| 50s ribosomal protein l13 | DWZ06_10440 | Not Available | Negative | 2516257 - 2516718 | 17129.7 |
| hypothetical protein | DWZ06_10445 | Not Available | Negative | 2517018 - 2517263 | 9041.7 |
| zeta toxin | DWZ06_10450 | Not Available | Negative | 2517253 - 2517828 | 21483.9 |
| duf4488 domain-containing protein | DWZ06_10455 | Not Available | Negative | 2518189 - 2518683 | 18600.8 |
| asparagine--trna ligase | DWZ06_10460 | Not Available | Negative | 2518846 - 2520249 | 53432.1 |
| pseudouridine synthase | DWZ06_10465 | Not Available | Negative | 2520272 - 2521738 | 56182.9 |
| adenylosuccinate lyase | DWZ06_10470 | Not Available | Negative | 2521814 - 2523160 | 50932.1 |
| mate family efflux transporter | DWZ06_10475 | Not Available | Negative | 2523254 - 2524603 | 49665.5 |
| aminopeptidase | DWZ06_10480 | Not Available | Positive | 2524766 - 2526259 | 55074.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

