Phocaeicola vulgatus strain AF29-13

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus strain AF29-13 is a Gram-positive, rod-shaped bacterium classified as an anaerobe, which means it thrives in environments devoid of oxygen. This strain is of particular interest due to its association with Homo sapiens, indicating it is host-associated. Phocaeicola vulgatus is characterized by its single-cell arrangement and lack of mobility, as it does not possess flagella. The strain is mesophilic, suggesting it prefers moderate temperature ranges for optimal growth. With a unique biotic relationship as a free-living organism, it may play a role in the human microbiome, contributing to the complex interactions within the host's gut environment. Phocaeicola vulgatus strain AF29-13 contains one replicon and has a double membrane structure, which is typical for many bacteria and may influence its resilience and adaptability in host-associated habitats. The study of this strain can offer insights into the microbial communities residing in the human gut and their implications for human health. Given its anaerobic nature and role in the human microbiome, Phocaeicola vulgatus may contribute to various metabolic processes, including the fermentation of dietary fibers, which are essential for gut health. Understanding the specific functions and interactions of this bacterium within the microbiome could provide valuable information regarding the maintenance of gut homeostasis and the potential impact on human health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
Strainstrain AF29-13

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus strain AF29-13
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus strain AF29-13 AF29-13.Scaf129, whole genome

Gene Summary

Adenine Count

1434359 bp

Thymine Count

1406831 bp

Guanine Count

1033248 bp

Cytosine Count

1035378 bp

Genome Length

4910436 bp

Protein-coding Genes

3936 genes

Non-Coding Genes

74 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nicotinate-nucleotide adenylyltransferaseDWZ06_10385Not AvailablePositive2508297 - 250886922162.7
duf3836 domain-containing proteinDWZ06_10390Not AvailableNegative2508952 - 250942218198.9
metallophosphoesteraseDWZ06_10395Not AvailableNegative2509650 - 251048931352.6
1,4-dihydroxy-2-naphthoate polyprenyltransferaseDWZ06_10400Not AvailablePositive2510563 - 251145332692.7
2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthaseDWZ06_10405Not AvailableNegative2511504 - 251198617475.2
faa hydrolase family proteinDWZ06_10410Not AvailableNegative2511983 - 251260023340.1
redox-sensing transcriptional repressor rexDWZ06_10415Not AvailableNegative2512605 - 251325524251.6
translation initiation factorDWZ06_10420Not AvailablePositive2513373 - 251371112663.2
elongation factor tsDWZ06_10425Not AvailableNegative2513770 - 251475935504.8
30s ribosomal protein s2DWZ06_10430Not AvailableNegative2514892 - 251573130564.9

Displaying genes 1991 – 2000 of 4010 in total

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.