Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF29-13
Accession NumberQRSX00000000.1
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 28 protein | DWZ06_00050 | Not Available | - | 11616 - 13022 | 52418.7 |
| atp-binding protein | DWZ06_00060 | Not Available | + | 13457 - 13699 | 8938.0 |
| glucuronyl hydrolase | DWZ06_00065 | Not Available | - | 13701 - 14927 | 46658.1 |
| nadh-quinone oxidoreductase subunit n | DWZ06_00070 | Not Available | - | 15103 - 16524 | 52268.5 |
| nadh-quinone oxidoreductase subunit m | DWZ06_00075 | Not Available | - | 16556 - 18037 | 53794.6 |
| nadh-quinone oxidoreductase subunit l | DWZ06_00080 | Not Available | - | 18091 - 19992 | 70327.3 |
| nadh-quinone oxidoreductase subunit nuok | DWZ06_00085 | Not Available | - | 19995 - 20303 | 11758.6 |
| nadh-quinone oxidoreductase subunit j | DWZ06_00090 | Not Available | - | 20309 - 20812 | 18224.2 |
| nadh-quinone oxidoreductase subunit i | DWZ06_00095 | Not Available | - | 20828 - 21280 | 16944.7 |
| nadh-quinone oxidoreductase subunit h | DWZ06_00100 | Not Available | - | 21280 - 22356 | 40265.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
