Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rip metalloprotease rsep | DWZ06_10335 | Not Available | Negative | 2499894 - 2501237 | 50887.1 |
| 1-deoxy-d-xylulose-5-phosphate reductoisomerase | DWZ06_10340 | Not Available | Negative | 2501294 - 2502442 | 42392.3 |
| m23 family peptidase | DWZ06_10345 | Not Available | Negative | 2502450 - 2503307 | 32093.4 |
| 16s rrna processing protein rimm | DWZ06_10350 | Not Available | Negative | 2503326 - 2503844 | 19831.7 |
| udp-n-acetylglucosamine 1-carboxyvinyltransferase | DWZ06_10355 | Not Available | Negative | 2503856 - 2505160 | 47644.1 |
| duf4290 domain-containing protein | DWZ06_10360 | Not Available | Negative | 2505179 - 2505805 | 24903.9 |
| trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex dimerization subunit type 1 tsab | DWZ06_10365 | Not Available | Negative | 2505852 - 2506541 | 25285.7 |
| yicc family protein | DWZ06_10370 | Not Available | Positive | 2506637 - 2507512 | 33867.7 |
| guanylate kinase | DWZ06_10375 | Not Available | Positive | 2507559 - 2508128 | 21367.4 |
| hypothetical protein | DWZ06_10380 | Not Available | Positive | 2508133 - 2508315 | 6793.87 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

