Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arac family transcriptional regulator | DWZ06_10235 | Not Available | Positive | 2474866 - 2475699 | 32375.9 |
| class ii fructose-1,6-bisphosphate aldolase | DWZ06_10240 | Not Available | Negative | 2475762 - 2476766 | 36460.6 |
| 50s ribosomal protein l31 type b | DWZ06_10245 | Not Available | Positive | 2477098 - 2477352 | 9656.59 |
| duf3256 family protein | DWZ06_10250 | Not Available | Negative | 2477437 - 2478084 | 24349.6 |
| phenylacetate--coa ligase | DWZ06_10255 | Not Available | Positive | 2478198 - 2479496 | 49228.5 |
| amino acid-binding protein | DWZ06_10260 | Not Available | Positive | 2479508 - 2479936 | 15630.9 |
| response regulator | DWZ06_10265 | Not Available | Negative | 2479979 - 2482705 | 103092.0 |
| carbohydrate kinase | DWZ06_10270 | Not Available | Negative | 2482901 - 2483788 | 32432.2 |
| mfs transporter | DWZ06_10275 | Not Available | Negative | 2483816 - 2484976 | 41814.0 |
| duf4980 domain-containing protein | DWZ06_10280 | Not Available | Negative | 2484992 - 2486875 | 70937.3 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

