Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ06_10080 | Not Available | Positive | 2443052 - 2443330 | 10801.4 |
| hypothetical protein | DWZ06_10085 | Not Available | Positive | 2443367 - 2443558 | 7463.55 |
| hypothetical protein | DWZ06_10090 | Not Available | Positive | 2444359 - 2444580 | 8477.08 |
| adenine nucleotide alpha hydrolase family protein | DWZ06_10095 | Not Available | Negative | 2445274 - 2446029 | 29123.7 |
| hypothetical protein | DWZ06_10100 | Not Available | Positive | 2446173 - 2447582 | 54158.7 |
| nodulation efficiency protein d (nfed) | DWZ06_10105 | Not Available | Positive | 2447596 - 2448066 | 17112.5 |
| upf0365 family protein | DWZ06_10110 | Not Available | Positive | 2448209 - 2449210 | 36124.0 |
| phosphorylase | DWZ06_10115 | Not Available | Positive | 2449404 - 2450282 | 32767.5 |
| gaf domain-containing protein | DWZ06_10120 | Not Available | Positive | 2450492 - 2450977 | 18138.7 |
| trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnme | DWZ06_10125 | Not Available | Positive | 2450988 - 2452484 | 55245.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

