Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| class i sam-dependent rrna methyltransferase | DWZ06_09980 | Not Available | Negative | 2419994 - 2421178 | 44435.1 |
| 3'-5' exonuclease domain-containing protein 2 | DWZ06_09985 | Not Available | Negative | 2421168 - 2421818 | 24635.5 |
| duf5063 domain-containing protein | DWZ06_09990 | Not Available | Negative | 2421815 - 2422378 | 21633.7 |
| dna translocase ftsk | DWZ06_09995 | Not Available | Positive | 2422483 - 2424948 | 91840.0 |
| hypothetical protein | DWZ06_10000 | Not Available | Positive | 2424965 - 2425579 | 22965.3 |
| thioredoxin-disulfide reductase | DWZ06_10005 | Not Available | Positive | 2425649 - 2426596 | 34005.6 |
| insulinase family protein | DWZ06_10010 | Not Available | Positive | 2426627 - 2429446 | 106190.0 |
| hypothetical protein | DWZ06_10015 | Not Available | Positive | 2429456 - 2430943 | 57446.9 |
| abc transporter atp-binding protein | DWZ06_10020 | Not Available | Positive | 2430956 - 2431663 | 26402.7 |
| nlpc/p60 family protein | DWZ06_10025 | Not Available | Positive | 2431660 - 2432172 | 19478.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

