Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 16s rrna (uracil(1498)-n(3))-methyltransferase | DWZ06_09925 | Not Available | Negative | 2410265 - 2410966 | 26175.7 |
| dna helicase uvrb | DWZ06_09930 | Not Available | Negative | 2410995 - 2411561 | 21270.7 |
| mfs transporter | DWZ06_09935 | Not Available | Negative | 2411620 - 2412897 | 46736.2 |
| duf5024 domain-containing protein | DWZ06_09940 | Not Available | Negative | 2413099 - 2413713 | 22972.6 |
| hypothetical protein | DWZ06_09945 | Not Available | Negative | 2413735 - 2414301 | 21072.0 |
| sigma-70 family rna polymerase sigma factor | DWZ06_09950 | Not Available | Negative | 2414292 - 2414762 | 18010.0 |
| galactose mutarotase | DWZ06_09955 | Not Available | Negative | 2414949 - 2416082 | 41888.4 |
| sigma-70 family rna polymerase sigma factor | DWZ06_09965 | Not Available | Positive | 2416716 - 2417261 | 20808.2 |
| autotransporter outer membrane beta-barrel domain-containing protein | DWZ06_09970 | Not Available | Positive | 2417258 - 2418496 | 47303.1 |
| class i sam-dependent methyltransferase | DWZ06_09975 | Not Available | Positive | 2418553 - 2419341 | 30974.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

