Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| histidine kinase | DWZ06_09875 | Not Available | Positive | 2399421 - 2400449 | 39021.8 |
| dna-binding response regulator | DWZ06_09880 | Not Available | Positive | 2400442 - 2401215 | 29809.8 |
| hypothetical protein | DWZ06_09885 | Not Available | Negative | 2401244 - 2401516 | 10520.9 |
| aldehyde dehydrogenase family protein | DWZ06_09890 | Not Available | Negative | 2401768 - 2405088 | 123986.0 |
| hypothetical protein | DWZ06_09895 | Not Available | Negative | 2405459 - 2406064 | 23278.7 |
| hypothetical protein | DWZ06_09900 | Not Available | Positive | 2406251 - 2406436 | 7314.11 |
| yjbq family protein | DWZ06_09905 | Not Available | Negative | 2406466 - 2406879 | 15533.7 |
| abc transporter permease | DWZ06_09910 | Not Available | Negative | 2406888 - 2408090 | 44901.3 |
| atp-binding cassette domain-containing protein | DWZ06_09915 | Not Available | Negative | 2408087 - 2408731 | 24439.4 |
| duf4836 family protein | DWZ06_09920 | Not Available | Negative | 2408728 - 2410260 | 56148.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

