Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutamine-hydrolyzing gmp synthase | DWZ06_09825 | Not Available | Positive | 2384284 - 2385591 | 48297.4 |
| aminopeptidase p family protein | DWZ06_09830 | Not Available | Negative | 2385749 - 2386909 | 42446.8 |
| hypothetical protein | DWZ06_09835 | Not Available | Positive | 2387026 - 2387448 | 16008.7 |
| efflux rnd transporter periplasmic adaptor subunit | DWZ06_09840 | Not Available | Positive | 2387571 - 2388722 | 43854.3 |
| hydrophobe/amphiphile efflux-1 family rnd transporter | DWZ06_09845 | Not Available | Positive | 2388735 - 2391884 | 115646.0 |
| tolc family protein | DWZ06_09850 | Not Available | Positive | 2391862 - 2393319 | 54832.0 |
| glsb/yeaq/ymge family stress response membrane protein | DWZ06_09855 | Not Available | Negative | 2393408 - 2393659 | 8674.2 |
| efflux rnd transporter periplasmic adaptor subunit | DWZ06_09860 | Not Available | Positive | 2393899 - 2394924 | 37900.1 |
| acrb/acrd/acrf family protein | DWZ06_09865 | Not Available | Positive | 2394945 - 2398004 | 112986.0 |
| tolc family protein | DWZ06_09870 | Not Available | Positive | 2397991 - 2399280 | 48530.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

