Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutamine synthetase type iii | DWZ06_09775 | Not Available | Positive | 2373963 - 2376152 | 82847.0 |
| crp/fnr family transcriptional regulator | DWZ06_09780 | Not Available | Positive | 2376313 - 2377014 | 26605.4 |
| ccoq/fixq family cbb3-type cytochrome c oxidase assembly chaperone | DWZ06_09785 | Not Available | Positive | 2377143 - 2377295 | 5511.84 |
| ferritin | DWZ06_09790 | Not Available | Positive | 2377328 - 2377840 | 19740.4 |
| 3-deoxy-8-phosphooctulonate synthase | DWZ06_09795 | Not Available | Negative | 2378001 - 2378798 | 28835.3 |
| lipid kinase | DWZ06_09800 | Not Available | Negative | 2378871 - 2379800 | 35312.0 |
| trna (adenosine(37)-n6)-dimethylallyltransferase miaa | DWZ06_09805 | Not Available | Negative | 2379806 - 2380729 | 35776.3 |
| type i glyceraldehyde-3-phosphate dehydrogenase | DWZ06_09810 | Not Available | Negative | 2380851 - 2381861 | 35961.1 |
| large conductance mechanosensitive channel protein mscl | DWZ06_09815 | Not Available | Positive | 2382013 - 2382453 | 15733.6 |
| gmp synthase (glutamine-hydrolyzing) | DWZ06_09820 | Not Available | Positive | 2382692 - 2384245 | 57645.2 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

