Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3'-5' exonuclease | DWZ06_09725 | Not Available | Positive | 2359116 - 2359892 | 29605.2 |
| bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase coabc | DWZ06_09730 | Not Available | Positive | 2359889 - 2361085 | 43178.4 |
| dna repair protein recn | DWZ06_09735 | Not Available | Positive | 2361201 - 2362862 | 62006.0 |
| 23s rrna (guanosine(2251)-2'-o)-methyltransferase rlmb | DWZ06_09740 | Not Available | Positive | 2362913 - 2363680 | 28167.3 |
| tetratricopeptide repeat protein | DWZ06_09745 | Not Available | Positive | 2363717 - 2365417 | 62540.1 |
| abc transporter permease | DWZ06_09750 | Not Available | Negative | 2366673 - 2367863 | 44503.8 |
| abc transporter permease | DWZ06_09755 | Not Available | Negative | 2367847 - 2369019 | 43620.6 |
| biotin/lipoyl-binding protein | DWZ06_09760 | Not Available | Negative | 2369080 - 2370075 | 36927.8 |
| tolc family protein | DWZ06_09765 | Not Available | Negative | 2370093 - 2371526 | 53881.0 |
| hypothetical protein | DWZ06_09770 | Not Available | Negative | 2371589 - 2373787 | 86181.9 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

