Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna-binding transcriptional accessory protein | DWZ06_09675 | Not Available | Positive | 2346486 - 2348615 | 79551.4 |
| nad(+) diphosphatase | DWZ06_09680 | Not Available | Positive | 2348638 - 2349435 | 30147.3 |
| putative transporter | DWZ06_09685 | Not Available | Positive | 2349512 - 2351173 | 59396.0 |
| fructose-bisphosphatase class iii | DWZ06_09690 | Not Available | Positive | 2351183 - 2353183 | 76532.4 |
| aspartate 1-decarboxylase | DWZ06_09695 | Not Available | Negative | 2353313 - 2353663 | 12822.7 |
| pantoate--beta-alanine ligase | DWZ06_09700 | Not Available | Negative | 2353685 - 2354533 | 31339.6 |
| glycogen synthase | DWZ06_09705 | Not Available | Positive | 2354886 - 2355710 | 31933.0 |
| duf4270 domain-containing protein | DWZ06_09710 | Not Available | Positive | 2355730 - 2357160 | 53592.2 |
| duf3127 domain-containing protein | DWZ06_09715 | Not Available | Negative | 2357409 - 2357786 | 13929.4 |
| dna polymerase iii subunit beta | DWZ06_09720 | Not Available | Positive | 2357940 - 2359064 | 41323.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

