Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf3826 domain-containing protein | DWZ06_09620 | Not Available | Negative | 2325397 - 2326065 | 25071.4 |
| polysaccharide lyase | DWZ06_09625 | Not Available | Negative | 2326090 - 2327823 | 64377.8 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ06_09630 | Not Available | Negative | 2327992 - 2330001 | 75993.3 |
| tonb-dependent receptor | DWZ06_09635 | Not Available | Negative | 2330022 - 2333477 | 126230.0 |
| sugar phosphate isomerase/epimerase | DWZ06_09640 | Not Available | Negative | 2333507 - 2334391 | 33290.8 |
| response regulator | DWZ06_09645 | Not Available | Negative | 2334557 - 2338960 | 168952.0 |
| glycoside hydrolase family 2 | DWZ06_09650 | Not Available | Negative | 2339086 - 2341710 | 98289.4 |
| hypothetical protein | DWZ06_09655 | Not Available | Positive | 2341785 - 2342009 | 8547.9 |
| abi family protein | DWZ06_09660 | Not Available | Positive | 2342973 - 2343935 | 37710.6 |
| duf1016 domain-containing protein | DWZ06_09670 | Not Available | Negative | 2344993 - 2346111 | 43242.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

