Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mbl fold metallo-hydrolase | DWZ06_09520 | Not Available | Negative | 2292726 - 2293517 | 30418.8 |
| hypothetical protein | DWZ06_09525 | Not Available | Negative | 2293527 - 2294717 | 45188.1 |
| rida family protein | DWZ06_09530 | Not Available | Negative | 2294880 - 2295257 | 13256.1 |
| transcription termination factor rho | DWZ06_09535 | Not Available | Positive | 2295685 - 2297694 | 74254.4 |
| right-handed parallel beta-helix repeat-containing protein | DWZ06_09540 | Not Available | Positive | 2297807 - 2299798 | 74692.5 |
| alpha-xylosidase | DWZ06_09545 | Not Available | Positive | 2299809 - 2302055 | 86484.6 |
| cobalamin-binding protein | DWZ06_09550 | Not Available | Positive | 2302061 - 2303863 | 66693.9 |
| na+/glucose cotransporter | DWZ06_09555 | Not Available | Positive | 2303897 - 2305468 | 57894.8 |
| hypothetical protein | DWZ06_09560 | Not Available | Positive | 2305475 - 2305660 | 7177.55 |
| methionine synthase | DWZ06_09565 | Not Available | Negative | 2305760 - 2306446 | 25351.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

