Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter atp-binding protein | DWZ06_09360 | Not Available | Negative | 2247650 - 2249593 | 73678.4 |
| hypothetical protein | DWZ06_09365 | Not Available | Negative | 2249990 - 2251666 | 63045.8 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ06_09370 | Not Available | Negative | 2251684 - 2253372 | 64074.0 |
| susc/raga family tonb-linked outer membrane protein | DWZ06_09375 | Not Available | Negative | 2253386 - 2256706 | 122257.0 |
| fecr family protein | DWZ06_09380 | Not Available | Negative | 2256956 - 2257969 | 39131.7 |
| rna polymerase sigma-70 factor | DWZ06_09385 | Not Available | Negative | 2258040 - 2258630 | 23285.1 |
| sgnh/gdsl hydrolase family protein | DWZ06_09395 | Not Available | Negative | 2260623 - 2261474 | 32546.0 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | DWZ06_09400 | Not Available | Negative | 2262075 - 2263583 | 57025.5 |
| susc/raga family tonb-linked outer membrane protein | DWZ06_09405 | Not Available | Negative | 2263605 - 2266826 | 118870.0 |
| adenylosuccinate synthase | DWZ06_09415 | Not Available | Negative | 2268548 - 2269819 | 46880.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

