Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ06_09255 | Not Available | Negative | 2218649 - 2218837 | 7268.18 |
| threonine synthase | DWZ06_09260 | Not Available | Negative | 2218977 - 2220278 | 47696.9 |
| cofactor-independent phosphoglycerate mutase | DWZ06_09265 | Not Available | Negative | 2220369 - 2221580 | 44511.4 |
| bifunctional aspartate kinase/homoserine dehydrogenase i | DWZ06_09270 | Not Available | Negative | 2221585 - 2224017 | 88655.7 |
| dna repair protein rada | DWZ06_09275 | Not Available | Positive | 2224545 - 2225912 | 49904.5 |
| duf1847 domain-containing protein | DWZ06_09280 | Not Available | Positive | 2225952 - 2226602 | 24388.4 |
| fad-binding protein | DWZ06_09285 | Not Available | Positive | 2226608 - 2228251 | 60702.7 |
| luxr family transcriptional regulator | DWZ06_09290 | Not Available | Positive | 2228379 - 2228999 | 23357.5 |
| tonb-dependent receptor | DWZ06_09295 | Not Available | Positive | 2229169 - 2231595 | 92194.1 |
| zinc ribbon domain-containing protein | DWZ06_09300 | Not Available | Negative | 2231835 - 2232797 | 36786.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

