Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| prephenate dehydratase | DWZ06_09205 | Not Available | Positive | 2206334 - 2207176 | 31728.1 |
| aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzyme | DWZ06_09210 | Not Available | Positive | 2207151 - 2208335 | 45052.1 |
| 3-deoxy-7-phosphoheptulonate synthase | DWZ06_09215 | Not Available | Positive | 2208355 - 2209422 | 39929.6 |
| prephenate dehydrogenase/arogenate dehydrogenase family protein | DWZ06_09220 | Not Available | Positive | 2209427 - 2210200 | 29390.4 |
| alpha/beta fold hydrolase | DWZ06_09225 | Not Available | Negative | 2210438 - 2211409 | 34960.6 |
| tonb-dependent receptor | DWZ06_09230 | Not Available | Positive | 2211964 - 2213985 | 76078.0 |
| hypothetical protein | DWZ06_09235 | Not Available | Positive | 2214019 - 2215107 | 41380.2 |
| abc transporter substrate-binding protein | DWZ06_09240 | Not Available | Positive | 2215111 - 2216247 | 42104.2 |
| iron abc transporter permease | DWZ06_09245 | Not Available | Positive | 2216363 - 2217394 | 36079.6 |
| abc transporter atp-binding protein | DWZ06_09250 | Not Available | Positive | 2217394 - 2218401 | 37114.8 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

