Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aminopeptidase p family protein | DWZ06_09155 | Not Available | Positive | 2192939 - 2194330 | 51826.4 |
| aminopeptidase | DWZ06_09160 | Not Available | Positive | 2194359 - 2195570 | 45970.4 |
| single-stranded-dna-specific exonuclease recj | DWZ06_09165 | Not Available | Positive | 2195685 - 2197457 | 66543.5 |
| recq family atp-dependent dna helicase | DWZ06_09170 | Not Available | Positive | 2197575 - 2199470 | 72952.9 |
| o-glcnacase | DWZ06_09175 | Not Available | Positive | 2199517 - 2201730 | 85002.3 |
| tetratricopeptide repeat protein | DWZ06_09180 | Not Available | Positive | 2201745 - 2202695 | 35774.7 |
| ai-2e family transporter | DWZ06_09185 | Not Available | Positive | 2202755 - 2203756 | 36988.0 |
| pyridoxal phosphate-dependent aminotransferase | DWZ06_09190 | Not Available | Negative | 2203757 - 2204932 | 44770.1 |
| protease | DWZ06_09195 | Not Available | Negative | 2205001 - 2205531 | 18954.9 |
| transcriptional regulator | DWZ06_09200 | Not Available | Positive | 2205721 - 2206077 | 13384.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

