Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| xre family transcriptional regulator | DWZ06_09005 | Not Available | Positive | 2153934 - 2154254 | 11865.9 |
| hypothetical protein | DWZ06_09010 | Not Available | Positive | 2154524 - 2157283 | 106761.0 |
| hypothetical protein | DWZ06_09015 | Not Available | Positive | 2157388 - 2158296 | 34937.9 |
| restriction endonuclease | DWZ06_09020 | Not Available | Negative | 2158723 - 2161971 | 125037.0 |
| duf87 domain-containing protein | DWZ06_09025 | Not Available | Negative | 2161983 - 2163569 | 59439.9 |
| dna sulfur modification protein dndd | DWZ06_09030 | Not Available | Negative | 2163575 - 2165575 | 76015.0 |
| hypothetical protein | DWZ06_09035 | Not Available | Negative | 2165590 - 2165808 | 8311.96 |
| type iii restriction endonuclease subunit r | DWZ06_09040 | Not Available | Negative | 2165815 - 2168172 | 90725.1 |
| site-specific dna-methyltransferase | DWZ06_09045 | Not Available | Negative | 2168288 - 2170087 | 69482.9 |
| xre family transcriptional regulator | DWZ06_09050 | Not Available | Negative | 2170102 - 2170344 | 9230.24 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

