Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | DWZ06_08945 | Not Available | Positive | 2128294 - 2130318 | 76769.4 |
| tonb-dependent receptor | DWZ06_08950 | Not Available | Positive | 2130721 - 2133822 | 114541.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ06_08955 | Not Available | Positive | 2133836 - 2135527 | 62989.2 |
| beta-xylosidase | DWZ06_08960 | Not Available | Positive | 2135812 - 2138205 | 91584.9 |
| beta-glucanase | DWZ06_08965 | Not Available | Positive | 2138293 - 2139435 | 42528.2 |
| glycoside hydrolase | DWZ06_08970 | Not Available | Positive | 2139760 - 2140761 | 37779.3 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ06_08975 | Not Available | Negative | 2140881 - 2142434 | 58412.6 |
| tonb-dependent receptor | DWZ06_08980 | Not Available | Negative | 2142447 - 2145518 | 113213.0 |
| rna polymerase sigma-70 factor | DWZ06_08990 | Not Available | Positive | 2148749 - 2149309 | 22138.4 |
| duf4974 domain-containing protein | DWZ06_08995 | Not Available | Positive | 2149383 - 2150327 | 36240.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

