Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 50s ribosomal protein l34 | DWZ06_08845 | Not Available | Negative | 2102276 - 2102431 | 6019.34 |
| elongation factor p | DWZ06_08850 | Not Available | Positive | 2102634 - 2103200 | 21126.5 |
| glycosyltransferase | DWZ06_08855 | Not Available | Positive | 2103302 - 2104291 | 37638.6 |
| dna repair protein radc | DWZ06_08860 | Not Available | Positive | 2104364 - 2105053 | 25659.1 |
| duf59 domain-containing protein | DWZ06_08865 | Not Available | Positive | 2105090 - 2105410 | 11973.4 |
| udp-2,3-diacylglucosamine diphosphatase | DWZ06_08870 | Not Available | Positive | 2105542 - 2106309 | 29795.7 |
| acetate kinase | DWZ06_08875 | Not Available | Negative | 2106375 - 2107571 | 42809.0 |
| phosphate acetyltransferase | DWZ06_08880 | Not Available | Negative | 2107597 - 2108610 | 35492.5 |
| cida/lrga family protein | DWZ06_08885 | Not Available | Positive | 2108813 - 2109166 | 13036.8 |
| lrgb family protein | DWZ06_08890 | Not Available | Positive | 2109147 - 2109842 | 24440.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

