Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| penicillin-binding protein 2 | DWZ06_00835 | Not Available | Positive | 219813 - 221663 | 69177.4 |
| rod shape-determining protein roda | DWZ06_00840 | Not Available | Positive | 221644 - 223098 | 54254.6 |
| gliding motility lipoprotein gldh | DWZ06_00845 | Not Available | Negative | 223102 - 223599 | 18778.6 |
| hypothetical protein | DWZ06_00850 | Not Available | Negative | 223562 - 225076 | 57743.0 |
| dna polymerase iii subunit delta | DWZ06_00855 | Not Available | Negative | 225166 - 226290 | 43533.9 |
| methylenetetrahydrofolate reductase | DWZ06_00860 | Not Available | Negative | 226318 - 227271 | 36210.4 |
| cardiolipin synthase | DWZ06_00865 | Not Available | Negative | 227627 - 228922 | 49717.2 |
| hypothetical protein | DWZ06_00870 | Not Available | Positive | 229292 - 229387 | 3305.9 |
| hypothetical protein | DWZ06_00875 | Not Available | Positive | 229430 - 229681 | 9778.84 |
| Trna-pro | Not Available | Not Available | Positive | 230053 - 230125 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

