Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | DWZ06_08790 | Not Available | Positive | 2084633 - 2086468 | 68434.3 |
| duf4976 domain-containing protein | DWZ06_08800 | Not Available | Positive | 2086675 - 2088258 | 61670.9 |
| beta-hexosaminidase | DWZ06_08805 | Not Available | Positive | 2088276 - 2090591 | 87330.9 |
| duf4981 domain-containing protein | DWZ06_08810 | Not Available | Positive | 2090600 - 2093659 | 116622.0 |
| alpha-1,3/4-fucosidase | DWZ06_08815 | Not Available | Positive | 2093677 - 2095536 | 69795.9 |
| hypothetical protein | DWZ06_08820 | Not Available | Positive | 2095783 - 2098179 | 90531.4 |
| phosphatase pap2 family protein | DWZ06_08825 | Not Available | Positive | 2098508 - 2099284 | 29161.7 |
| hypothetical protein | DWZ06_08830 | Not Available | Negative | 2099317 - 2099508 | 7179.2 |
| atpase | DWZ06_08835 | Not Available | Positive | 2099523 - 2100668 | 42937.4 |
| anaerobic sulfatase-maturation protein | DWZ06_08840 | Not Available | Positive | 2100862 - 2102097 | 48023.5 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

