Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| beta-galactosidase | DWZ06_08590 | Not Available | Positive | 2019733 - 2024013 | 162349.0 |
| transporter | DWZ06_08595 | Not Available | Positive | 2024104 - 2025702 | 56704.7 |
| tonb-dependent receptor | DWZ06_08600 | Not Available | Positive | 2025970 - 2029089 | 115362.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ06_08605 | Not Available | Positive | 2029122 - 2030555 | 53986.5 |
| tonb-dependent receptor | DWZ06_08610 | Not Available | Positive | 2030767 - 2033841 | 113198.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ06_08615 | Not Available | Positive | 2033867 - 2035366 | 55455.3 |
| duf4981 domain-containing protein | DWZ06_08620 | Not Available | Positive | 2035496 - 2038666 | 121131.0 |
| glycoside hydrolase family 2 | DWZ06_08625 | Not Available | Positive | 2038751 - 2041591 | 106105.0 |
| dna-binding protein | DWZ06_08630 | Not Available | Positive | 2041739 - 2044969 | 121337.0 |
| sialate o-acetylesterase | DWZ06_08635 | Not Available | Positive | 2044987 - 2046411 | 53405.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

